Stem-loop eca-mir-3065

Accession

MI0028288

Description

Equus caballus eca-mir-3065 precursor miRNA

Sequence

3502 reads, 15.0 reads per million, 134 experiments

caggucaggaggcuggcagcugcccucuUCAACAAAAUCACUGAUGCUGGaguugcgugugucaucacUCAGCACCAGGAUAUUGUUGGGGaggacggcccgugcggcggcuggggcuggc
((((((((....)))))..))).((((((((((((.(((.(((.(((((.(((...(((...))).)))))))).)))))).)))))))))))).((((((..((....))..))))))..

Structure

----caggucaggaggcuggcagcugc            A   A   A     G   ugc   u 
                           ccucuUCAACAA AUC CUG UGCUG agu   gug  
                           |||||||||||| ||| ||| ||||| |||   ||| g
                           ggaGGGGUUGUU UAG GAC ACGAC Uca   uac  
cggucggggucggcggcgugcccggca            A   -   C     -   --c   u 

Annotation confidence High

Genome context

11: 1969227-1969347 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-3065

Mature eca-miR-3065-5p

• Accession: MIMAT0051547
• Description: Equus caballus eca-miR-3065-5p mature miRNA
• Sequence: 29 - UCAACAAAAUCACUGAUGCUGG - 50
• Evidence: experimental ; Illumina [1]

Mature eca-miR-3065-3p

• Accession: MIMAT0034658
• Description: Equus caballus eca-miR-3065-3p mature miRNA
• Sequence: 69 - UCAGCACCAGGAUAUUGUUGGGG - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545