Stem-loop eca-mir-9115

Accession

MI0028295

Description

Equus caballus eca-mir-9115 precursor miRNA

Sequence

11 reads, 2 reads per million, 1 experiments

ugcugggaguggaguggggcggggggggugucagggcgcgACGUGAGAACUGAAGUGCAGGGACccgggcuccagggcccugucccuccaccuuccugagcucuguccaggcccuggguucuccuaccucccuuugggcacca
((((.((((.(((....((..(((((((..(((((((..((((.(((..(.((((((.((((((..(((((....))))).)))))).)).))))..)..)))))))...))))))).))))))).))))))))).))))...

Structure

---    g    u   gugg  cg       ug       -gc    U   AA -U    -  C      cc     c 
   ugcu ggag gga    gg  ggggggg  ucagggc   gACG GAG  C  GAAG UG AGGGAC  gggcu c
   |||| |||| |||    ||  |||||||  |||||||   |||| |||  |  |||| || ||||||  |||||  
   acgg uuuc ccu    cc  uccucuu  ggucccg   cugu cuc  g  cuuc ac ucccug  cccgg a
acc    g    -   ----  -a       -g       gac    -   ga uc    c  c      -u     g 

Annotation confidence Not enough data

Genome context

chr12: 20718806-20718948 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-9115

Mature eca-miR-9115

• Accession: MIMAT0034664
• Description: Equus caballus eca-miR-9115 mature miRNA
• Sequence: 41 - ACGUGAGAACUGAAGUGCAGGGAC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545