Stem-loop eca-mir-9116

Accession

MI0028296

Description

Equus caballus eca-mir-9116 precursor miRNA

Sequence

9 reads, 1 reads per million, 1 experiments

aucccaggcugacucguaggguuucaccaccuucuucaccUUUAUGUCUCAUAUCUCUGUGuacggggccuggcauacagcaggugcugaauaaaugugacuagauggagcccccugccaggccagcuuucccgugg
.....((((((.((.((((((.....(((.((...((((.(((((...((((((((((((((.(((...)))..)))))).))))).)))))))).))))..)).)))....)))))).))..))))))........

Structure

---auccc      -a  c      uuuca   c  ucu    c     GUC   -     -      -a   g 
        aggcug  cu guaggg     cca cu   ucac UUUAU   UCA UAUCU CUGUGu  cgg  
        ||||||  || ||||||     ||| ||   |||| |||||   ||| ||||| ||||||  ||| g
        uucgac  ga cguccc     ggu ga   agug aaaua   agu gugga gacaua  guc  
ggugcccu      cg  c      -ccga   a  -uc    u     ---   c     c      cg   c 

Annotation confidence Not enough data

Genome context

chr12: 20724724-20724860 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-9116

Mature eca-miR-9116

• Accession: MIMAT0034665
• Description: Equus caballus eca-miR-9116 mature miRNA
• Sequence: 41 - UUUAUGUCUCAUAUCUCUGUG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545