Stem-loop eca-mir-483

Accession

MI0028301

Description

Equus caballus eca-mir-483 precursor miRNA

Literature search

6 open access papers mention eca-mir-483
(52 sentences)

Sequence

325286 reads, 452.0 reads per million, 196 experiments

gcugagccuuggagccuguggugggggagcgggggAGGACGGGAGGGGAGGAGGGCGugguuuuaugcagcuccUCACUCCUCUCCUCCCGUCUUCUUcuucuuccucccauuccugccugucucggcggcuc
((((((.(..((.....((((.(((((((.(((((((((((((((((((((((((.((.((.....)).)).))...))))))))))))))))))))))).))))))))))).....)).).)))))).....

Structure

-----      c uu  agccu    u       c                       ---  C  g  u 
     gcugag c  gg     gugg gggggag gggggAGGACGGGAGGGGAGGAG   GG Gu gu u
     |||||| |  ||     |||| ||||||| |||||||||||||||||||||||   || || || u
     cggcuc g  cc     uacc cuccuuc ucUUCUUCUGCCCUCCUCUCCUC   cc cg cg a
cucgg      u -u  guccu    -       u                       ACU  u  a  u 

Annotation confidence High

Genome context

12: 34440792-34440924 [-]

Mature eca-miR-483-5p

• Accession: MIMAT0051548
• Description: Equus caballus eca-miR-483-5p mature miRNA
• Sequence: 36 - AGGACGGGAGGGGAGGAGGGCG - 57
• Evidence: experimental ; Illumina [1]

Mature eca-miR-483-3p

• Accession: MIMAT0034670
• Description: Equus caballus eca-miR-483-3p mature miRNA
• Sequence: 75 - UCACUCCUCUCCUCCCGUCUUCUU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545