Stem-loop eca-mir-1379

Accession

MI0028305

Description

Equus caballus eca-mir-1379 precursor miRNA

Literature search

1 open access papers mention eca-mir-1379
(1 sentences)

Sequence

749 reads, 113 reads per million, 1 experiments

cacuggaaugacugaggggcuuucagggagcccacgggcucaggcucucagcccgagccguguucuucagauggGCACGGGCUGCAGCGCCGACGCCUgugggccccaugggcugggccaaaccggucugucc
....(((..(((((...(((((((((((.((((((((((((.(((.(((((((((.(((..............))).))))))).)).))))).))))))))))))).)))...)))))....)))))..)))

Structure

cacu   au     -agg     ---   -   a          -  a   u  -       a   guguuc 
    gga  gacug    ggcuu   uca ggg gcccacgggc uc ggc cu cagcccg gcc      u
    |||  |||||    |||||   ||| ||| |||||||||| || ||| || ||||||| |||       
    ccu  cuggc    ccggg   ggu ccc cgggugUCCG AG CCG GA GUCGGGC CGg      u
----   gu     caaa     ucg   a   -          C  -   C  C       A   guagac 

Annotation confidence Not enough data

Genome context

chr30: 12533239-12533371 [+]

Mature eca-miR-1379

• Accession: MIMAT0034674
• Description: Equus caballus eca-miR-1379 mature miRNA
• Sequence: 75 - GCACGGGCUGCAGCGCCGACGCCU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545