Stem-loop eca-mir-1379

Accession

MI0028305

Description

Equus caballus eca-mir-1379 precursor miRNA

Literature search

1 open access papers mention eca-mir-1379
(1 sentences)

Sequence

193489 reads, 276.0 reads per million, 214 experiments

cacuggaaugacugaggggcuuucagggagcccacGGGCUCAGGCUCUCAGCCCGAGccguguucuucagauggGCACGGGCUGCAGCGCCGACGCCUgugggccccaugggcugggccaaaccggucugucc
....(((..(((((...(((((((((((.((((((((((((.(((.(((((((((.(((..............))).))))))).)).))))).))))))))))))).)))...)))))....)))))..)))

Structure

cacu   au     -agg     ---   -   a          -  A   U  -       A   guguuc 
    gga  gacug    ggcuu   uca ggg gcccacGGGC UC GGC CU CAGCCCG Gcc      u
    |||  |||||    |||||   ||| ||| |||||||||| || ||| || ||||||| |||       
    ccu  cuggc    ccggg   ggu ccc cgggugUCCG AG CCG GA GUCGGGC CGg      u
----   gu     caaa     ucg   a   -          C  -   C  C       A   guagac 

Annotation confidence High

Genome context

30: 12978678-12978810 [+]

Mature eca-miR-1379-5p

• Accession: MIMAT0051551
• Description: Equus caballus eca-miR-1379-5p mature miRNA
• Sequence: 36 - GGGCUCAGGCUCUCAGCCCGAG - 57
• Evidence: experimental ; Illumina [1]

Mature eca-miR-1379-3p

• Accession: MIMAT0034674
• Description: Equus caballus eca-miR-1379-3p mature miRNA
• Sequence: 75 - GCACGGGCUGCAGCGCCGACGCCU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545