Stem-loop eca-mir-7177b

Accession

MI0028323

Description

Equus caballus eca-mir-7177b precursor miRNA

Literature search

2 open access papers mention eca-mir-7177b
(2 sentences)

Sequence

20828 reads, 52.0 reads per million, 167 experiments

ugcucauccauacgaagugauuaguuucuccAGGGCACUAGGAGACCACUUGguaaauuacuuuaaccaagcacucuAAAUGGUCCCCUAGUGCUCUGGgaaaguuaaucucauucaccuuccauggaagagcagauua
(((((.(((((..((((.((((((((((.(((((((((((((.(((((((((((.((.....)).)))))).........))))).))))))))))))))))).))))))........)))).))))).))))).....

Structure

-----     a     ac    -------u      -    u             A     ---------      a  u 
     ugcuc uccau  gaag        gauuag uuuc ccAGGGCACUAGG GACCA         CUUGgu aa u
     ||||| |||||  ||||        |||||| |||| ||||||||||||| |||||         |||||| || a
     acgag aggua  cuuc        cuaauu aaag GGUCUCGUGAUCC CUGGU         gaacca uu c
auuag     a     -c    cacuuacu      g    -             C     AAAucucac      a  u 

Annotation confidence High

Genome context

13: 16445399-16445537 [+]

Mature eca-miR-7177b-5p

• Accession: MIMAT0051555
• Description: Equus caballus eca-miR-7177b-5p mature miRNA
• Sequence: 32 - AGGGCACUAGGAGACCACUUG - 52
• Evidence: experimental ; Illumina [1]

Mature eca-miR-7177b-3p

• Accession: MIMAT0034691
• Description: Equus caballus eca-miR-7177b-3p mature miRNA
• Sequence: 78 - AAAUGGUCCCCUAGUGCUCUGG - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545