Stem-loop eca-mir-9141

Accession

MI0028325

Description

Equus caballus eca-mir-9141 precursor miRNA

Sequence

1 reads, 0 reads per million, 1 experiments

guggcagcacagggggcuguccucccuccccucagucauuggacuaaugagcccagcaggguccugggguccaccugaugUCUGAGUGCUUUGUGGGCUUGGUCCcagcaggaggagggggucuccccagcuguccccuggccag
.((((....((((((((.((((.(((((((((..((....(((((...(((((((.((((((.((.(((((.....)))..)).)).))))))))))))))))))..))))).))))))))........)).)))))))))))).

Structure

g    agca        u  --------  u      -   ca  cauu     aau       g      c  g  --   c 
 uggc    cagggggc gu        cc cccucc ccu  gu    ggacu   gagccca cagggu cu gg  guc a
 ||||    |||||||| ||        || |||||| |||  ||    |||||   ||||||| |||||| || ||  ||| c
 accg    guccccug cg        gg gggagg gga  cg    CCUGG   UUCGGGU GUUUCG GA UC  uag c
g    ----        u  accccucu  -      a   --  --ac     ---       -      U  G  Ug   u 

Annotation confidence Not enough data

Genome context

chr13: 40697020-40697164 [+]

Mature eca-miR-9141

• Accession: MIMAT0034693
• Description: Equus caballus eca-miR-9141 mature miRNA
• Sequence: 81 - UCUGAGUGCUUUGUGGGCUUGGUCC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545