Stem-loop eca-mir-8908k-1

Accession

MI0028326

Description

Equus caballus eca-mir-8908k-1 precursor miRNA

Sequence

206699 reads, 476.0 reads per million, 138 experiments

uuccuccaccuugagccaugcagugugcagugcccUACCCAGAAUGGUGCCGAAUACUUAgucuacaugUAUUCGGCACCUUCUGGGUAGcguaaugcucaacacgaacgcuguucuuguuggccuuaugaccgg
..............((..((((...))))..)).((((((((((.((((((((((((...........))))))))))))))))))))))(((((.((.(((((.((((...)))).))))))).))))).....

Structure

-----------uuccuccaccuugagccaugcagugugcagugcc          U            UUAg 
                                             cUACCCAGAA GGUGCCGAAUAC    u
                                             |||||||||| ||||||||||||    c
                                             GAUGGGUCUU CCACGGCUUAUg    u
ggccaguauuccgguuguucuugucgcaagcacaacucguaaugc          -            uaca 

Annotation confidence High

Genome context

X: 119901694-119901828 [-]

Clustered miRNAs

21 other miRNAs are < 10 kb from eca-mir-8908k-1

Mature eca-miR-8908k-1-5p

• Accession: MIMAT0034694
• Description: Equus caballus eca-miR-8908k-1-5p mature miRNA
• Sequence: 36 - UACCCAGAAUGGUGCCGAAUACUUA - 60
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908k-1-3p

• Accession: MIMAT0051556
• Description: Equus caballus eca-miR-8908k-1-3p mature miRNA
• Sequence: 70 - UAUUCGGCACCUUCUGGGUAG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545