Stem-loop eca-mir-9142

Accession

MI0028327

Description

Equus caballus eca-mir-9142 precursor miRNA

Sequence

3 reads, 0 reads per million, 1 experiments

caaaguaucuucauuugucuucuugcugauccucaggacaaaucuauguugaugaauuaguaagggauUCAGUAACACGGAUUUGUCAUGAggguaaaugagaaaaucuacauagaagccc
....((.(((.........((((((...(((((((.(((((((((.(((((.((((((.......)))))).))))).))))))))).)))))))...)))))).........))).))..

Structure

caaa  a   ucauuuguc      cug       g         a     a      ag 
    gu ucu         uucuug   auccuca gacaaaucu uguug ugaauu  u
    || |||         ||||||   ||||||| ||||||||| ||||| ||||||  a
    cg aga         aagagu   ugggAGU CUGUUUAGG ACAAU ACUuag  a
--cc  a   uacaucuaa      aaa       A         C     G      gg 

Annotation confidence Not enough data

Genome context

chrX: 115885618-115885738 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-9142

Mature eca-miR-9142

• Accession: MIMAT0034695
• Description: Equus caballus eca-miR-9142 mature miRNA
• Sequence: 69 - UCAGUAACACGGAUUUGUCAUGA - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545