Stem-loop eca-mir-9142

Accession

MI0028327

Description

Equus caballus eca-mir-9142 precursor miRNA

Sequence

1941 reads, 12.0 reads per million, 20 experiments

caaaguaucuucauuugucuucuugcugauccucAGGACAAAUCUAUGUUGAUGAAuuaguaagggauuCAGUAACACGGAUUUGUCAUGAGgguaaaugagaaaaucuacauagaagccc
....((.(((.........((((((...(((((((.(((((((((.(((((.((((((.......)))))).))))).))))))))).)))))))...)))))).........))).))..

Structure

caaa  a   ucauuuguc      cug       G         A     A      ag 
    gu ucu         uucuug   auccucA GACAAAUCU UGUUG UGAAuu  u
    || |||         ||||||   ||||||| ||||||||| ||||| ||||||  a
    cg aga         aagagu   uggGAGU CUGUUUAGG ACAAU ACuuag  a
--cc  a   uacaucuaa      aaa       A         C     G      gg 

Annotation confidence High

Genome context

X: 119927834-119927954 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from eca-mir-9142

Mature eca-miR-9142-5p

• Accession: MIMAT0051557
• Description: Equus caballus eca-miR-9142-5p mature miRNA
• Sequence: 35 - AGGACAAAUCUAUGUUGAUGAA - 56
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9142-3p

• Accession: MIMAT0034695
• Description: Equus caballus eca-miR-9142-3p mature miRNA
• Sequence: 70 - CAGUAACACGGAUUUGUCAUGAG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545