Stem-loop eca-mir-8908b-1

Accession

MI0028329

Description

Equus caballus eca-mir-8908b-1 precursor miRNA

Sequence

224207 reads, 356.0 reads per million, 119 experiments

ccaugcugugugcagugcccUACCCGGUAGGUACUGAUCACUuagccuacgugUAAUUAGUACCUGUCUGGGUAGAguaaggccaacaaga
......(((..((..(((.((((((((((((((((((((((.........)))..))))))))))).)))))))).)))..))..)))...

Structure

ccaugc   gu  ag   c        -           --   Uua 
      ugu  gc  ugc cUACCCGG UAGGUACUGAU  CAC   g
      |||  ||  ||| |||||||| |||||||||||  |||   c
      aca  cg  aug GAUGGGUC GUCCAUGAUUA  gug   c
---aga   ac  ga   A        U           AU   cau 

Annotation confidence High

Genome context

X: 119919758-119919848 [-]

Clustered miRNAs

16 other miRNAs are < 10 kb from eca-mir-8908b-1

Mature eca-miR-8908b-1-5p

• Accession: MIMAT0051560
• Description: Equus caballus eca-miR-8908b-1-5p mature miRNA
• Sequence: 21 - UACCCGGUAGGUACUGAUCACU - 42
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908b-3p

• Accession: MIMAT0034697
• Description: Equus caballus eca-miR-8908b-3p mature miRNA
• Sequence: 54 - UAAUUAGUACCUGUCUGGGUAGA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545