Stem-loop eca-mir-8908d-1

Accession

MI0028330

Description

Equus caballus eca-mir-8908d-1 precursor miRNA

Sequence

185028 reads, 295.0 reads per million, 122 experiments

acuuugagccauucugugugcagugcccUACCCGGUAAGGUACUGAUCACuuacuuagacuacaugugAUCAGUGCCUGUCUGGGUGGAguaaugcucuacaagagcaacguuugggag
..(((((((..(((((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))).))))....)))))))..

Structure

ac       --ca    -   -u   g   c        UA             uuacuu 
  uuugagc    uucu gug  gca ugc cUACCCGG  AGGUACUGAUCAC      a
  |||||||    |||| |||  ||| ||| ||||||||  |||||||||||||      g
  ggguuug    gaga cau  cgu aug GGUGGGUC  UCCGUGACUAgug      a
ga       caac    a   cu   a   A        UG             uacauc 

Annotation confidence High

Genome context

X: 119910102-119910220 [-]

Clustered miRNAs

28 other miRNAs are < 10 kb from eca-mir-8908d-1

Mature eca-miR-8908d-1-5p

• Accession: MIMAT0051562
• Description: Equus caballus eca-miR-8908d-1-5p mature miRNA
• Sequence: 29 - UACCCGGUAAGGUACUGAUCAC - 50
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908d-3p

• Accession: MIMAT0034698
• Description: Equus caballus eca-miR-8908d-3p mature miRNA
• Sequence: 69 - AUCAGUGCCUGUCUGGGUGGA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545