miRBase entry: eca-mir-507b

Stem-loop eca-mir-507b


Accession
MI0028331
Description
Equus caballus eca-mir-507b precursor miRNA


Sequence

540 reads, 21.0 reads per million, 26 experiments
gcagggucacuacauuuaaCCAUACUGUGUGCAGUGCUCcacuccaaagagugccauucagguguaggaaaguaugAUUGGCACUUUUUUGAGUGUGguaauucacaacauauacgaccacauguguuggcccuggg
.((((((((.(((((..........((((((...((((.(((((.(((((((((((.(((..............))).))))))))))).))))).))))...))).)))...........))))).))))))))..

Structure
-g        c     -uuaaCCAUAC   -   CAG    C     c           u   ggugua 
  caggguca uacau           UGU GUG   UGCU cacuc aaagagugcca uca      g
  |||||||| |||||           ||| |||   |||| ||||| ||||||||||| |||       
  gucccggu gugua           aca cac   augG GUGAG UUUUUCACGGU Agu      g
gg        u     caccagcauau   a   uua    U     U           U   augaaa 


Annotation confidence Low
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Genome context
X: 120869739-120869875 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-507b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-507b-5p

Accession MIMAT0051564
Description Equus caballus eca-miR-507b-5p mature miRNA
Sequence 20 - CCAUACUGUGUGCAGUGCUC - 39
Evidence experimental
Illumina [1]

Mature eca-miR-507b-3p

Accession MIMAT0034699
Description Equus caballus eca-miR-507b-3p mature miRNA
Sequence 77 - AUUGGCACUUUUUUGAGUGUG - 97
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545