Stem-loop eca-mir-8908f-2

Accession

MI0028334

Description

Equus caballus eca-mir-8908f-2 precursor miRNA

Sequence

29558 reads, 663.0 reads per million, 87 experiments

ggcaggaucuaccacuuuagccgugcugugugcaguguccUACUCAGAAAGGUACUGAUCACUuagaggacAAGUAGUCACUGCCUUUCUGGGUagaaugaugcucaacaagaacaacauugaugguggccuguagcagug
.(((((..((((((........((.((.(((..(((((((((((((((((((((.((((.((((.......)))).)))).)))))))))))))))...))))))..))))).))........))))))))))).......

Structure

------g     au      cuuuagcc  g  g   gc      ---               C    C    ag 
       gcagg  cuacca        gu cu ugu  aguguc   cUACUCAGAAAGGUA UGAU ACUu  a
       |||||  ||||||        || || |||  ||||||   ||||||||||||||| |||| ||||  g
       ugucc  gguggu        ca ga aca  ucguag   gaUGGGUCUUUCCGU ACUG UGAA  g
gugacga     --      aguuacaa  a  -   ac      uaa               C    A    ca 

Annotation confidence Medium

Genome context

X: 119908721-119908861 [-]

Clustered miRNAs

26 other miRNAs are < 10 kb from eca-mir-8908f-2

Mature eca-miR-8908f-5p

• Accession: MIMAT0034701
• Description: Equus caballus eca-miR-8908f-5p mature miRNA
• Sequence: 41 - UACUCAGAAAGGUACUGAUCACU - 63
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908f-3p

• Accession: MIMAT0051566
• Description: Equus caballus eca-miR-8908f-3p mature miRNA
• Sequence: 72 - AAGUAGUCACUGCCUUUCUGGGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545