Stem-loop eca-mir-8908e-1

Accession

MI0028336

Description

Equus caballus eca-mir-8908e-1 precursor miRNA

Sequence

70153 reads, 186.0 reads per million, 112 experiments

ggcagauucuccacuuugauccguucugugugcagugcccUACCCAGCAAGGUACUGAUCGCUUAgacgagguAUGAUCAGUGCCUGUCUGGGUGGAguaaugcucaacaagaacaacauuugggagguuagucagacuggugcu
(((....(((((....((....((((((((.(((.(((.((((((((..(((((((((((((((.....))))..)))))))))))..)))))))).))).))).).)).)))))..))....)))))...)))...........

Structure

-----------   agau     acuu  aucc     -  - u   g   c        CA           --    A 
           ggc    ucucc    ug    guucu gu g gca ugc cUACCCAG  AGGUACUGAUC  GCUU g
           |||    |||||    ||    ||||| || | ||| ||| ||||||||  |||||||||||  |||| a
           cug    ggagg    ac    caaga ca c cgu aug GGUGGGUC  UCCGUGACUAG  ugga c
ucguggucaga   -auu     guuu  --aa     a  a u   a   A        UG           UA    g 

Annotation confidence Medium

Genome context

X: 119916838-119916982 [-]

Clustered miRNAs

21 other miRNAs are < 10 kb from eca-mir-8908e-1

Mature eca-miR-8908e-1-5p

• Accession: MIMAT0034702
• Description: Equus caballus eca-miR-8908e-1-5p mature miRNA
• Sequence: 41 - UACCCAGCAAGGUACUGAUCGCUUA - 65
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908e-3p

• Accession: MIMAT0051568
• Description: Equus caballus eca-miR-8908e-3p mature miRNA
• Sequence: 74 - AUGAUCAGUGCCUGUCUGGGUGGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545