Stem-loop eca-mir-676

Accession

MI0028342

Description

Equus caballus eca-mir-676 precursor miRNA

Literature search

2 open access papers mention eca-mir-676
(2 sentences)

Sequence

72730 reads, 118.0 reads per million, 201 experiments

gagacuucauguugguuccucaccagaaugcaugaCUCUUCAAUCUCGGGACUCGCAgaauuaauggaaugCCGUCCUAAGGUUGUUGAGUUcugcguuucugggcauuucaucucuguggggaagu
.............(.(((((((((((((((((.(((((..((((((.(((((..(((............))).))))).))))))..))))).)))).))))))..............))))))).)

Structure

gagacuucauguu g       --------------      -    u     UU      C     UC   gaauu 
             g uuccuca              ccagaa ugca gaCUC  CAAUCU GGGAC  GCA     a
             | |||||||              |||||| |||| |||||  |||||| |||||  |||      
             u aaggggu              ggucuu gcgu UUGAG  GUUGGA UCCUG  Cgu     a
------------- g       gucucuacuuuacg      u    c     UU      A     -C   aaggu 

Annotation confidence High

Genome context

X: 55035804-55035930 [+]

Mature eca-miR-676-5p

• Accession: MIMAT0051569
• Description: Equus caballus eca-miR-676-5p mature miRNA
• Sequence: 36 - CUCUUCAAUCUCGGGACUCGCA - 57
• Evidence: experimental ; Illumina [1]

Mature eca-miR-676-3p

• Accession: MIMAT0034705
• Description: Equus caballus eca-miR-676-3p mature miRNA
• Sequence: 72 - CCGUCCUAAGGUUGUUGAGUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545