Stem-loop eca-mir-514b

Accession

MI0028343

Description

Equus caballus eca-mir-514b precursor miRNA

Literature search

1 open access papers mention eca-mir-514b
(1 sentences)

Sequence

2638 reads, 45.0 reads per million, 29 experiments

ucugugcgcaguaccccAUUCCAGGAAGUGCCAAACAUGuggcuagauaaauGCUUGGCAUCUCUUAGAGUGAGguaaugcacaacaaguacgac
..((((((...((((.(((((.((((.(((((((.(((............))).))))))).)))).))))).)))).))))))...........

Structure

---------uc      cag    c     C    A       A   Guggc 
           ugugcg   uacc cAUUC AGGA GUGCCAA CAU     u
           ||||||   |||| ||||| |||| ||||||| |||      
           acacgu   augG GUGAG UUCU UACGGUU Gua     a
cagcaugaaca      --a    A     A    C       C   aauag 

Annotation confidence High

Genome context

X: 120897840-120897934 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-514b

Mature eca-miR-514b-5p

• Accession: MIMAT0034706
• Description: Equus caballus eca-miR-514b-5p mature miRNA
• Sequence: 18 - AUUCCAGGAAGUGCCAAACAUG - 39
• Evidence: experimental ; Illumina [1]

Mature eca-miR-514b-3p

• Accession: MIMAT0051570
• Description: Equus caballus eca-miR-514b-3p mature miRNA
• Sequence: 53 - GCUUGGCAUCUCUUAGAGUGAG - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545