Stem-loop eca-mir-8908k-2

Accession

MI0028344

Description

Equus caballus eca-mir-8908k-2 precursor miRNA

Sequence

206700 reads, 476.0 reads per million, 138 experiments

cagugugcagugcccUACCCAGAAUGGUGCCGAAUACUUaguguacaugUAUUCGGCACCUUCUGGGUAgcguaaugcucaacacgaacgacguu
..(((((((.(((.((((((((((.((((((((((((...........)))))))))))))))))))))).))).)))...))))..........

Structure

--------ca    ---   g   c          U            UUag 
          gugu   gca ugc cUACCCAGAA GGUGCCGAAUAC    u
          ||||   ||| ||| |||||||||| ||||||||||||    g
          caca   cgu aug gAUGGGUCUU CCACGGCUUAUg    u
uugcagcaag    acu   a   c          -            uaca 

Annotation confidence High

Genome context

X: 119907388-119907482 [-]

Clustered miRNAs

29 other miRNAs are < 10 kb from eca-mir-8908k-2

Mature eca-miR-8908k-1-5p

• Accession: MIMAT0034694
• Description: Equus caballus eca-miR-8908k-1-5p mature miRNA
• Sequence: 16 - UACCCAGAAUGGUGCCGAAUACUU - 39
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908k-2-3p

• Accession: MIMAT0061134
• Description: Equus caballus eca-miR-8908k-2-3p mature miRNA
• Sequence: 50 - UAUUCGGCACCUUCUGGGUA - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545