Stem-loop eca-mir-506a

Accession

MI0028345

Description

Equus caballus eca-mir-506a precursor miRNA

Literature search

1 open access papers mention eca-mir-506a
(1 sentences)

Sequence

67444 reads, 350.0 reads per million, 100 experiments

aaaaagguuaagaaugucaccuucagcuacguuuguucagugccuUACUCAGGGAGGCGUUGUUCACAUagauugguauaUGAAUGGCACCUUUCUGAGUAGAGUaaugugcaacauggacaacguuuguggugguacuuguaau
......((((.((.(((((((..(((..(((((.(((((((((((((((((((((((.((((((((.(((......))).)))))))).)))))))))))))......).)).)).))))))))))))).))))))).)).))))

Structure

aaaaag    a  a       uu   cu     u     -  -  - ------             C        C   ga 
      guua ga ugucacc  cag  acguu guuca gu gc c      uUACUCAGGGAGG GUUGUUCA AUa  u
      |||| || |||||||  |||  ||||| ||||| || || |      ||||||||||||| |||||||| |||   
      uaau uu auggugg  guu  ugcaa caggu ca cg g      GAUGAGUCUUUCC CGGUAAGU uau  u
------    g  c       -u   --     -     a  a  u uaaUGA             A        a   gg 

Annotation confidence High

Genome context

X: 120853301-120853445 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-506a

Mature eca-miR-506a-5p

• Accession: MIMAT0061135
• Description: Equus caballus eca-miR-506a-5p mature miRNA
• Sequence: 46 - UACUCAGGGAGGCGUUGUUCACAU - 69
• Evidence: experimental ; Illumina [1]

Mature eca-miR-506a-3p

• Accession: MIMAT0034707
• Description: Equus caballus eca-miR-506a-3p mature miRNA
• Sequence: 81 - UGAAUGGCACCUUUCUGAGUAGAGU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545