Stem-loop eca-mir-8908g-2

Accession

MI0028346

Description

Equus caballus eca-mir-8908g-2 precursor miRNA

Sequence

49377 reads, 170.0 reads per million, 126 experiments

ggcagauucucuacuuugagccauucugugugcagugcccUACCCAGUAAGGUACUGAUCACUUacuuagacuacaugugAUCAGUGCCUGUCUGGGUGGAguaaugcucuacaagaacaacguuugggagggucuucagacu
((.(((((((((....(((((..(((((((.(((.(((.((((((((..(((((((((((((...............)))))))))))))..)))))))).))).)))..))).))))....)))))))))))))))).....

Structure

-----  c         acuu     --ca    -   -u   g   c        UA             UUacuu 
     gg agauucucu    ugagc    uucu gug  gca ugc cUACCCAG  AGGUACUGAUCAC      a
     || |||||||||    |||||    |||| |||  ||| ||| ||||||||  |||||||||||||      g
     cu ucugggagg    guuug    aaga cau  cgu aug GGUGGGUC  UCCGUGACUAgug      a
ucaga  -         ----     caac    a   cu   a   A        UG             uacauc 

Annotation confidence Medium

Genome context

X: 119911970-119912112 [-]

Clustered miRNAs

25 other miRNAs are < 10 kb from eca-mir-8908g-2

Mature eca-miR-8908g-5p

• Accession: MIMAT0034708
• Description: Equus caballus eca-miR-8908g-5p mature miRNA
• Sequence: 41 - UACCCAGUAAGGUACUGAUCACUU - 64
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908g-3p

• Accession: MIMAT0051571
• Description: Equus caballus eca-miR-8908g-3p mature miRNA
• Sequence: 81 - AUCAGUGCCUGUCUGGGUGGA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545