Stem-loop eca-mir-509b

Accession

MI0028347

Description

Equus caballus eca-mir-509b precursor miRNA

Literature search

1 open access papers mention eca-mir-509b
(1 sentences)

Sequence

13128 reads, 169.0 reads per million, 79 experiments

ggcugccauccuuagacauucguugugugguacucUACUCCAAAGAGUGGCAAUCAUGUguaauuagaugugaUUGACACCUCUGUGAGUGGAGUaacaugugacacaugcggcacaggugauggcacuguag
((.((((((((((.(....(((((((((.(((((((((((((.((.(((.(((((((((........))))))))).))))).)).)))))))))).....).))))).))))..)))).)))))))))....

Structure

----  c       -   a acau    -     g -----          -  A  A   G         gua 
    gg ugccauc cuu g    ucgu ugugu g     uacucUACUC CA AG GUG CAAUCAUGU   a
    || ||||||| ||| |    |||| ||||| |     |||||||||| || || ||| |||||||||    
    uc acgguag gga c    ggcg acaca u     aUGAGGUGAG GU UC CAC GUUagugua   u
gaug  -       u   - --ac    u     g guaca          U  C  -   A         gau 

Annotation confidence High

Genome context

X: 120880951-120881083 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-509b

Mature eca-miR-509b-5p

• Accession: MIMAT0034709
• Description: Equus caballus eca-miR-509b-5p mature miRNA
• Sequence: 36 - UACUCCAAAGAGUGGCAAUCAUGU - 59
• Evidence: experimental ; Illumina [1]

Mature eca-miR-509b-3p

• Accession: MIMAT0051572
• Description: Equus caballus eca-miR-509b-3p mature miRNA
• Sequence: 74 - UUGACACCUCUGUGAGUGGAGU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545