Stem-loop eca-mir-8908j

Accession

MI0028350

Description

Equus caballus eca-mir-8908j precursor miRNA

Literature search

1 open access papers mention eca-mir-8908j
(1 sentences)

Sequence

255521 reads, 525.0 reads per million, 175 experiments

gcuguguguggugccCUACCCGGAAGGUACUGAUCACCUAgccuauguguCAUUAGUACCUGUCUGGGUAGAguaacucucaacaagaacaacau
..(((....(((((.(((((((((((((((((((.(((........).)).)))))))))).))))))))).)).)))....)))..........

Structure

--------gc   gugu   -  c         -          C  - UAg 
          ugu    ggu gc CUACCCGGA AGGUACUGAU AC C   c
          |||    ||| || ||||||||| |||||||||| || |    
          aca    uca ug GAUGGGUCU UCCAUGAUUA ug g   c
uacaacaaga   acuc   a  A         G          C  u uau 

Annotation confidence High

Genome context

X: 119909254-119909348 [-]

Clustered miRNAs

27 other miRNAs are < 10 kb from eca-mir-8908j

Mature eca-miR-8908j-5p

• Accession: MIMAT0034711
• Description: Equus caballus eca-miR-8908j-5p mature miRNA
• Sequence: 16 - CUACCCGGAAGGUACUGAUCACCUA - 40
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908j-3p

• Accession: MIMAT0051574
• Description: Equus caballus eca-miR-8908j-3p mature miRNA
• Sequence: 51 - CAUUAGUACCUGUCUGGGUAGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545