Stem-loop eca-mir-8908a-1

Accession

MI0028352

Description

Equus caballus eca-mir-8908a-1 precursor miRNA

Sequence

2904 reads, 440 reads per million, 1 experiments

ggcagauacuccacuuugauccauucugugugcagugcccuacccagcaagguacugaucgcuuagacgagguaugAUCAGUGCCUGUCUAGGUGGAguaaugcucaacaagaacaacguuuggaagcgucaucaga
((((..(((((((((..((.....)).(((..(((((((...........)))))))..))).(((((.((((((.....)))))))))))))))))))).))))...........(((((....))))).......

Structure

--------------------------------    ga         uugauccauucugugugcagugcccuacccagcaagguacugaucgcu     g      g 
                                ggca  uacuccacu                                                uagac agguau A
                                ||||  |||||||||                                                ||||| |||||| U
                                ucgu  augAGGUGG                                                AUCUG UCCGUG C
agacuacugcgaagguuugcaacaagaacaac    -a         ------------------------------------------------     -      A 

Annotation confidence Not enough data

Genome context

chrX: 115859210-115859346 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-8908a-1

Mature eca-miR-8908a

• Accession: MIMAT0034713
• Description: Equus caballus eca-miR-8908a mature miRNA
• Sequence: 77 - AUCAGUGCCUGUCUAGGUGGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545