Stem-loop eca-mir-2114

Accession

MI0028354

Description

Equus caballus eca-mir-2114 precursor miRNA

Literature search

1 open access papers mention eca-mir-2114
(1 sentences)

Sequence

3651 reads, 7.0 reads per million, 99 experiments

ugggcucagggacaggccauggccuccaugcuccUAGUCCCUUCCUUGAAGGGUCGgauaagucacaugacgAGCCUCAAGCAAGGGACUUUGAgcugguggcucccagcagccuccuguuccugaacc
..((.(((((((((((....((((.(((.((((..((((((((.(((((.((.(((..............))).))))))).))))))))..))))))).))))...........))))))))))).))

Structure

ug  c           -------ccau    u   u    cU        C     A  G   gauaag 
  gg ucagggacagg           ggcc cca gcuc  AGUCCCUU CUUGA GG UCG      u
  || |||||||||||           |||| ||| ||||  |||||||| ||||| || |||       
  cc aguccuugucc           ucgg ggu cgAG  UCAGGGAA GAACU CC Agc      c
--  a           uccgacgaccc    u   -    UU        C     -  G   aguaca 

Annotation confidence High

Genome context

X: 123270350-123270478 [+]

Mature eca-miR-2114-5p

• Accession: MIMAT0051576
• Description: Equus caballus eca-miR-2114-5p mature miRNA
• Sequence: 35 - UAGUCCCUUCCUUGAAGGGUCG - 56
• Evidence: experimental ; Illumina [1]

Mature eca-miR-2114-3p

• Accession: MIMAT0034714
• Description: Equus caballus eca-miR-2114-3p mature miRNA
• Sequence: 73 - AGCCUCAAGCAAGGGACUUUGA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545