Stem-loop eca-mir-8908m

Accession

MI0028359

Description

Equus caballus eca-mir-8908m precursor miRNA

Sequence

121782 reads, 307.0 reads per million, 84 experiments

uuggccucuucuccaccuugagacauuugugugcagggccCUGCCCAGAAUGGUGCUGACUACGUagauuaagugUAGUCAGUGCCAUCUGGGUAGAgcgaugcucaacaugaacaacguucggggugucuuucagagcaggugu
...((((.((((.(((((((((...((((((((((..((.(((((((((.((((((((((((((.........))))))))))))))))))))))).))..)))...))))))).....)))))))))......)))).))))..

Structure

uug    c    -----c         --aca       ---   gg  c         A              Uag 
   gccu uucu      caccuugag     uuugugu   gca  gc CUGCCCAGA UGGUGCUGACUACG   a
   |||| ||||      |||||||||     |||||||   |||  || ||||||||| ||||||||||||||   u
   ugga gaga      guggggcuu     aaguaca   cgu  cg GAUGGGUCU ACCGUGACUGAUgu   u
-ug    c    cuuucu         gcaac       acu   ag  A         -              gaa 

Annotation confidence High

Genome context

X: 119904875-119905019 [-]

Clustered miRNAs

26 other miRNAs are < 10 kb from eca-mir-8908m

Mature eca-miR-8908m-5p

• Accession: MIMAT0034717
• Description: Equus caballus eca-miR-8908m-5p mature miRNA
• Sequence: 41 - CUGCCCAGAAUGGUGCUGACUACGU - 65
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908m-3p

• Accession: MIMAT0061136
• Description: Equus caballus eca-miR-8908m-3p mature miRNA
• Sequence: 76 - UAGUCAGUGCCAUCUGGGUAGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545