Stem-loop eca-mir-1543

Accession

MI0028380

Description

Equus caballus eca-mir-1543 precursor miRNA

Sequence

15316 reads, 47.0 reads per million, 173 experiments

uuuugguguuguggcugaguaccuuugggcaguguUUUGCACCUCUGAGAGUGGAGUaacuccuccuguggagUUGGUCCUAGUCUGGGUGCAAACaauuuauuucuguuagaaaaggacccugucuuaag
............(((.(.((.(((((.((((((((((.((((((...(((.((((.(((((((......))))))).))).).))))))))))))))........)))))...))))))).).))).....

Structure

uuuugguguugu   u a  a     --g     --------     U      CUG   G -   G       uc 
            ggc g gu ccuuu   ggcag        uguUU GCACCU   AGA U GGA Uaacucc  c
            ||| | || |||||   |||||        ||||| ||||||   ||| | ||| |||||||   
            cug c ca ggaaa   uuguc        aCAAA CGUGGG   UCU A CCU GUUgagg  u
-------gaauu   u c  -     aga     uuuauuua     -      ---   G U   G       ug 

Annotation confidence Medium

Genome context

14: 36671907-36672037 [-]

Mature eca-miR-1543-5p

• Accession: MIMAT0051582
• Description: Equus caballus eca-miR-1543-5p mature miRNA
• Sequence: 36 - UUUGCACCUCUGAGAGUGGAGU - 57
• Evidence: experimental ; Illumina [1]

Mature eca-miR-1543-3p

• Accession: MIMAT0034733
• Description: Equus caballus eca-miR-1543-3p mature miRNA
• Sequence: 74 - UUGGUCCUAGUCUGGGUGCAAAC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545