miRBase entry: eca-mir-9159

Stem-loop eca-mir-9159


Accession
MI0028383
Description
Equus caballus eca-mir-9159 precursor miRNA


Sequence

6186 reads, 39.0 reads per million, 170 experiments
aaaggugcugcacauguuaccagcgacccugcuagccuugUCCUCUUUCUUUGCUUCCUUCUUuuugaaagaucaagAAUGAAGCAGGGAAAGGAACAAGgagggacagguaaaggauucuggugguuuacggcuuccu
...(((((((..........)))).)))(((((..((((((.(.(((((((((((((.(((((..(.....)..))))).)))))))))))))).))))))..)).)))....((((..(((........)))..))))

Structure
--aaaggugcugcacauguuaccagcgacc   -  ag      C U             C     uu g 
                              cug cu  ccuugU C CUUUCUUUGCUUC UUCUU  u a
                              ||| ||  |||||| | ||||||||||||| |||||  | a
                              gac gg  gGAACA G GAAAGGGACGAAG AAgaa  a a
uccuucggcauuugguggucuuaggaaaug   a  ga      A -             U     cu g 


Annotation confidence High
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Genome context
14: 46977310-46977448 [+]

Database links

Mature eca-miR-9159-5p

Accession MIMAT0034736
Description Equus caballus eca-miR-9159-5p mature miRNA
Sequence 41 - UCCUCUUUCUUUGCUUCCUUCUU - 63
Evidence experimental
Illumina [1]

Mature eca-miR-9159-3p

Accession MIMAT0051583
Description Equus caballus eca-miR-9159-3p mature miRNA
Sequence 78 - AAUGAAGCAGGGAAAGGAACAAG - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545