miRBase entry: eca-mir-9162

Stem-loop eca-mir-9162


Accession
MI0028386
Description
Equus caballus eca-mir-9162 precursor miRNA


Sequence

437 reads, 2.0 reads per million, 81 experiments
uaaccuuagcagcagccuccauaaaauagcccuagcaccCAGAGUCCAAGCAGCUGCAGACagaaucguaaaggccuCCCUGCAGAUGACUGGACUCCAggcgcuccuggcugcaacagguugccguggcuguggggag
...((.((((.(((((((........(((((..(((.((..(((((((..((.((((((..((..((.....)).))..)))))).))..)))))))..)).)))...)))))....)))))))....)))).))....

Structure
-uaa  u    ---a       ccauaaaa     -cu   a  CA       AG  G      AC  aa  g 
    cc uagc    gcagccu        uagcc   agc cc  GAGUCCA  CA CUGCAG  ag  uc u
    || ||||    |||||||        |||||   ||| ||  |||||||  || ||||||  ||  || a
    gg gucg    cguugga        gucgg   ucg gg  CUCAGGU  GU GACGUC  uc  gg a
gagg  u    gugc       ----caac     ucc   c  AC       CA  A      CC  -c  a 


Annotation confidence High
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Genome context
14: 33433390-33433528 [-]

Database links

Mature eca-miR-9162-5p

Accession MIMAT0051585
Description Equus caballus eca-miR-9162-5p mature miRNA
Sequence 40 - CAGAGUCCAAGCAGCUGCAGAC - 61
Evidence experimental
Illumina [1]

Mature eca-miR-9162-3p

Accession MIMAT0034739
Description Equus caballus eca-miR-9162-3p mature miRNA
Sequence 78 - CCCUGCAGAUGACUGGACUCCA - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545