Stem-loop eca-mir-3613

Accession

MI0028389

Description

Equus caballus eca-mir-3613 precursor miRNA

Sequence

37963 reads, 109.0 reads per million, 161 experiments

ccggcgcgcaacacgaugguuggguuuggauUGUUGUACUUUUUUUUUUGUUCguugcauuuuuaggaACAAAAAAAAAAGCCCAACCCUUcacaccacuucauccgcaucucugaggacc
..((.(((......(((((...(((.((((..((((..(((((((((((((((.(.........).)))))))))))))))..))))..)))).)))...)))))))).))..........

Structure

--------cc  c   caacac     uug   u    uU    UA               g ugc 
          gg gcg      gaugg   ggu ugga  GUUG  CUUUUUUUUUUGUUC u   a
          || |||      |||||   ||| ||||  ||||  ||||||||||||||| |   u
          cu cgc      cuacu   cca acUU  CAAC  GAAAAAAAAAACAag a   u
ccaggagucu  a   ------     uca   c    CC    CC               g uuu 

Annotation confidence High

Genome context

17: 21087944-21088064 [+]

Mature eca-miR-3613-5p

• Accession: MIMAT0051586
• Description: Equus caballus eca-miR-3613-5p mature miRNA
• Sequence: 32 - UGUUGUACUUUUUUUUUUGUUC - 53
• Evidence: experimental ; Illumina [1]

Mature eca-miR-3613-3p

• Accession: MIMAT0034742
• Description: Equus caballus eca-miR-3613-3p mature miRNA
• Sequence: 69 - ACAAAAAAAAAAGCCCAACCCUU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545