Stem-loop eca-mir-9168-2

Accession

MI0028394

Description

Equus caballus eca-mir-9168-2 precursor miRNA

Sequence

26 reads, 4 reads per million, 1 experiments

ccggcugccccugcccuuccacuccaacggccucuccucuucugcagugggugggacuggagggcccuggagaccccccAGCACACUCGCUGACUGAGGGAUGaugugagugccaugggccuggggaucugagcauggaugug
((((((.((((.((((...(((((..(((...((.((((.....(((((((((.(.((((.((((......).))).))))).)))))))))...))))))...))))))))....))))..)))).....))).))).....

Structure

-----   -   ----g    -u    -uuc     ca   gcc  u    uucug         g a    a   - cc 
     ccg gcu     cccc  gccc    cacuc  acg   uc ccuc     cagugggug g cugg ggg c  u
     ||| |||     ||||  ||||    |||||  |||   || ||||     ||||||||| | |||| ||| |   
     ggu cga     gggg  cggg    gugag  ugu   AG GGAG     GUCGCUCAC C GAcc ccc g  g
gugua   a   gucua    uc    uacc     --   aGU  -    --UCA         A -    c   a ag 

Annotation confidence Not enough data

Genome context

chr16: 3269613-3269755 [-]

Mature eca-miR-9168

• Accession: MIMAT0034746
• Description: Equus caballus eca-miR-9168 mature miRNA
• Sequence: 80 - AGCACACUCGCUGACUGAGGGAUG - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545