Stem-loop eca-mir-425

Accession

MI0028397

Description

Equus caballus eca-mir-425 precursor miRNA

Literature search

4 open access papers mention eca-mir-425
(4 sentences)

Sequence

247544 reads, 630.0 reads per million, 234 experiments

guccccgggucgugcgccugcggcauggaaagcgcuuuggAAUGACACGAUCACUCCCGUUGagugggcacacaagaagCCAUCGGGAAUAUCGUGUCCGCCCagugcucuuucggcgccucccagcaggaccuugaggcccu
(((.(.(((((.(((....(.(((.(.(((((.((.((((...((((((((...(((((....((((............)))))))))..))))))))...)))).)).))))).).))).)...))).))))).).)))...

Structure

---   c c     g   gccu c   a g     c  u    AAU        CAC     UUGa    gcaca 
   guc c ggguc ugc    g ggc u gaaag gc uugg   GACACGAU   UCCCG    gugg     c
   ||| | ||||| |||    | ||| | ||||| || ||||   ||||||||   |||||    ||||      
   cgg g uccag acg    c ccg g cuuuc cg gaCC   CUGUGCUA   AGGGC    UACC     a
ucc   a u     g   -acc u   c g     u  u    CGC        -UA     ----    gaaga 

Annotation confidence High

Genome context

16: 39558572-39558714 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-425

Mature eca-miR-425-5p

• Accession: MIMAT0051587
• Description: Equus caballus eca-miR-425-5p mature miRNA
• Sequence: 41 - AAUGACACGAUCACUCCCGUUG - 62
• Evidence: experimental ; Illumina [1]

Mature eca-miR-425-3p

• Accession: MIMAT0034749
• Description: Equus caballus eca-miR-425-3p mature miRNA
• Sequence: 80 - CCAUCGGGAAUAUCGUGUCCGCCC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545