Stem-loop eca-mir-191b

Accession

MI0028398

Description

Equus caballus eca-mir-191b precursor miRNA

Literature search

2 open access papers mention eca-mir-191b
(2 sentences)

Sequence

85832 reads, 199.0 reads per million, 40 experiments

acuaagacgcugcucaggcagaagagcaggGAACGAAAUCCAAGCGCAGCUGgaaugcucuggagacaacAGCUGCUUUUGGGAUUCCGUUGcccgcuguccagccguugggggcgggg
.......((((.((..(((.(.(.(((.((.((((.((((((((.(((((((.....((....))....))))))).))).))))).)))).)).))).).).)))...)).))))...

Structure

acuaaga    g  -ca   a a g   a  G    A     -   C       gaaug  c 
       cgcu cu   ggc g a agc gg AACG AAUCC AAG GCAGCUG     cu u
       |||| ||   ||| | | ||| || |||| ||||| ||| |||||||     ||  
       gcgg gg   ccg c u ucg cc UUGC UUAGG UUU CGUCGAc     ga g
----ggg    g  uug   a c g   c  G    C     G   U       -aaca  g 

Annotation confidence High

Genome context

16: 39558120-39558238 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-191b

Mature eca-miR-191b-5p

• Accession: MIMAT0034750
• Description: Equus caballus eca-miR-191b-5p mature miRNA
• Sequence: 31 - GAACGAAAUCCAAGCGCAGCUG - 52
• Evidence: experimental ; Illumina [1]

Mature eca-miR-191b-3p

• Accession: MIMAT0051588
• Description: Equus caballus eca-miR-191b-3p mature miRNA
• Sequence: 71 - AGCUGCUUUUGGGAUUCCGUUG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545