Stem-loop eca-mir-9177

Accession

MI0028405

Description

Equus caballus eca-mir-9177 precursor miRNA

Sequence

656 reads, 39.0 reads per million, 89 experiments

augcagaaaccguuacuuacaggaacaccaucCUGCUUUGCUCCCACUUUGUCCUguggccugauuaccagGAGCAGUGGGUGCAGACAGGCuggcacucuugggaucagcuuucugcugaagcuac
..(((((((..(((.....(((((...(((.((((.(((((.((((((...(((((.(.........))))))..)))))).))))))))).)))...))))).....)))))))))).........

Structure

-------au       cc   acuua     aca   u    C     U      UUG     u gcc 
         gcagaaa  guu     cagga   cca cCUG UUUGC CCCACU   UCCUg g   u
         |||||||  |||     |||||   ||| |||| ||||| ||||||   ||||| |   g
         cgucuuu  cga     guucu   ggu GGAC AGACG GGGUGA   AGgac c   a
caucgaagu       --   cuagg     cac   C    -     U      -CG     - auu 

Annotation confidence High

Genome context

19: 38337210-38337334 [+]

Mature eca-miR-9177-5p

• Accession: MIMAT0051589
• Description: Equus caballus eca-miR-9177-5p mature miRNA
• Sequence: 33 - CUGCUUUGCUCCCACUUUGUCCU - 55
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9177-3p

• Accession: MIMAT0034757
• Description: Equus caballus eca-miR-9177-3p mature miRNA
• Sequence: 72 - GAGCAGUGGGUGCAGACAGGC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545