Stem-loop eca-mir-9179

Accession

MI0028408

Description

Equus caballus eca-mir-9179 precursor miRNA

Sequence

921 reads, 2.0 reads per million, 103 experiments

guaagguucuccuugcucaggacuuuaGCAGGACGUCUACCUCUGACCCUccaggagaauaggGUCAUGGGUGGACUUCCUGCUAAaguccugagcacagucagcaggaac
.........((((((((((((((((((((((((.((((((((.(((((((..........))))))).)))))))).))))))))))))))))))))........))))..

Structure

guaagguuc    --------                    C        C       ccag 
         uccu        ugcucaggacuuuaGCAGGA GUCUACCU UGACCCU    g
         ||||        |||||||||||||||||||| |||||||| |||||||     
         agga        acgaguccugaAAUCGUCCU CAGGUGGG ACUGgga    a
-------ca    cgacugac                    U        U       uaag 

Annotation confidence High

Genome context

19: 56650553-56650663 [-]

Mature eca-miR-9179-5p

• Accession: MIMAT0051590
• Description: Equus caballus eca-miR-9179-5p mature miRNA
• Sequence: 28 - GCAGGACGUCUACCUCUGACCCU - 50
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9179-3p

• Accession: MIMAT0034759
• Description: Equus caballus eca-miR-9179-3p mature miRNA
• Sequence: 64 - GUCAUGGGUGGACUUCCUGCUAA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545