Stem-loop efu-mir-34b

Accession

MI0028575

Description

Eptesicus fuscus efu-mir-34b precursor miRNA

Sequence

69953 reads, 3269.0 reads per million, 5 experiments

ugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUgcucugugcuugCAAUCACUAACUCCACUGCCAUCAAaacaaggcac
((((..((((...(((((((...((((.(((((((((.....))..)))))))))))...)))))))....))))..)))).

Structure

-    cg    -guA       UAA    C       --  u 
 ugcu  guuu    GGCAGUG   UUAG UGAUUGU  gc c
 ||||  ||||    |||||||   |||| |||||||  || u
 acgg  caaA    CCGUCAC   AAUC ACUAACg  cg g
c    aa    ACUA       CUC    -       uu  u 

Annotation confidence High

Genome context

JH977889.1: 779590-779671 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-34b

Mature efu-miR-34b-5p

• Accession: MIMAT0058741
• Description: Eptesicus fuscus efu-miR-34b-5p mature miRNA
• Sequence: 13 - AGGCAGUGUAAUUAGCUGAUUGU - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-34b-3p

• Accession: MIMAT0034891
• Description: Eptesicus fuscus efu-miR-34b-3p mature miRNA
• Sequence: 48 - CAAUCACUAACUCCACUGCCAUCAA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545