Stem-loop efu-let-7d

Accession

MI0028701

Description

Eptesicus fuscus efu-let-7d precursor miRNA

Sequence

17001 reads, 176.0 reads per million, 8 experiments

guuccuaggaAGAGGUAGUAGGUUGCAUAGUUUUagggcagggauuuugcccacaaggagguaaCUAUACGACCUGCUGCCUUUCUUagggccuua
..((((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))).....

Structure

---gu        A              C      -------UUa      g 
     uccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
     |||||||| |||||||||||||| ||||||          |||||| a
     gggaUUCU UUCCGUCGUCCAGC UAUCaa          cccguu u
auucc        -              A      uggaggaaca      u 

Annotation confidence High

Genome context

JH977714.1: 1026627-1026722 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-let-7d

Mature efu-let-7d-5p

• Accession: MIMAT0035016
• Description: Eptesicus fuscus efu-let-7d-5p mature miRNA
• Sequence: 11 - AGAGGUAGUAGGUUGCAUAGUUUU - 34
• Evidence: experimental ; Illumina [1]

Mature efu-let-7d-3p

• Accession: MIMAT0058811
• Description: Eptesicus fuscus efu-let-7d-3p mature miRNA
• Sequence: 65 - CUAUACGACCUGCUGCCUUUCUU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545