Stem-loop efu-mir-338

Accession

MI0028791

Description

Eptesicus fuscus efu-mir-338 precursor miRNA

Sequence

27895 reads, 254.0 reads per million, 8 experiments

gccguccuccCCAACAAGAUCCUGGUGCUGAGUgaugacucgcaacUCCAGCAUCAGUGAUUUUGUUgaagagggcagccu
((.((((((..((((((((((((((((((((((...........))).))))))))).))))))))))..)))))).))..

Structure

--  c      cC          -         -   gaug 
  gc guccuc  CAACAAGAUC CUGGUGCUG AGU    a
  || ||||||  |||||||||| ||||||||| |||    c
  cg cgggag  gUUGUUUUAG GACUACGAC Uca    u
uc  a      aa          U         C   acgc 

Annotation confidence Medium

Genome context

JH977722.1: 1021185-1021265 [+]

Mature efu-miR-338-5p

• Accession: MIMAT0035098
• Description: Eptesicus fuscus efu-miR-338-5p mature miRNA
• Sequence: 11 - CCAACAAGAUCCUGGUGCUGAGU - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-338-3p

• Accession: MIMAT0058865
• Description: Eptesicus fuscus efu-miR-338-3p mature miRNA
• Sequence: 47 - UCCAGCAUCAGUGAUUUUGUU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545