miRBase entry: efu-mir-9340

Stem-loop efu-mir-9340

Accession

MI0028798

Description

Eptesicus fuscus efu-mir-9340 precursor miRNA

Sequence

ggaaaugacaUCCGGAAUGGAGUGGAGAGGUGAGCgucaguaguucaagguccuuccuccuugaaauucuaggauuuccuucuugg
((((.....(((((((((((((.((((.(((((((.......)))))...)))))))))).....))))).)))))))).......

Structure

-------    augac    -     -----    U    A  ---     gu 
       ggaa     aUCC GGAAU     GGAG GGAG GG   UGAGC  c
       ||||     |||| |||||     |||| |||| ||   |||||  a
       ccuu     uagg ucuua     ccuc cuuc cu   acuug  g
gguucuu    -----    a     aaguu    -    -  gga     au

Annotation confidence Not enough data

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Genome context

JH977628.1: 14069838-14069923 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-9340

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature efu-miR-9340

Accession	MIMAT0035104
Description	Eptesicus fuscus efu-miR-9340 mature miRNA
Sequence	11 - UCCGGAAUGGAGUGGAGAGGUGAGC - 35
Evidence	experimental Illumina [1]

References

PubMed ID: 24692655
Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
"Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
"Mol Biol Evol (2014) 31:1536-1545