Stem-loop efu-mir-196

Accession

MI0028821

Description

Eptesicus fuscus efu-mir-196 precursor miRNA

Sequence

38659 reads, 346.0 reads per million, 8 experiments

aucuguggcuUAGGUAGUUUCAUGUUGUUGGGAuugaguuuugaacUCGGCAACAAGAAACUGCCUGAguuacaucagu
...((((((((((((((((((.((((((((((.((........)))))))))))).)))))))))))))))))).....

Structure

--auc                  A          A  gag 
     uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
     |||||||||||||||||| |||||||||| ||    
     acauugAGUCCGUCAAAG ACAACGGCUc aa   u
ugacu                  A          -  guu 

Annotation confidence High

Genome context

JH977623.1: 30451063-30451141 [+]

Mature efu-miR-196-5p

• Accession: MIMAT0035121
• Description: Eptesicus fuscus efu-miR-196-5p mature miRNA
• Sequence: 11 - UAGGUAGUUUCAUGUUGUUGGGA - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-196-3p

• Accession: MIMAT0058876
• Description: Eptesicus fuscus efu-miR-196-3p mature miRNA
• Sequence: 47 - UCGGCAACAAGAAACUGCCUGA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545