Stem-loop efu-mir-450

Accession

MI0028829

Description

Eptesicus fuscus efu-mir-450 precursor miRNA

Sequence

166 reads, 4.0 reads per million, 8 experiments

gcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaauauaaauguAUUGGGAACAUUUUGCAUUCAuaguuuuguau
((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).))..

Structure

--  u       UUU     U               aa 
  gc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
  || |||||||   ||||| |||||||||||||||  a
  ug uuugauA   ACGUU UACAAGGGUUAugua  u
ua  u       CUU     U               aa 

Annotation confidence Medium

Genome context

JH977765.1: 658793-658869 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-450

Mature efu-miR-450-5p

• Accession: MIMAT0035128
• Description: Eptesicus fuscus efu-miR-450-5p mature miRNA
• Sequence: 11 - UUUUGCGAUGUGUUCCUAAUAU - 32
• Evidence: experimental ; Illumina [1]

Mature efu-miR-450-3p

• Accession: MIMAT0058881
• Description: Eptesicus fuscus efu-miR-450-3p mature miRNA
• Sequence: 46 - AUUGGGAACAUUUUGCAUUCA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545