miRBase entry: efu-mir-628

Stem-loop efu-mir-628


Accession
MI0028842
Description
Eptesicus fuscus efu-mir-628 precursor miRNA


Sequence

1898 reads, 22.0 reads per million, 8 experiments
ucacuuccucAUGCUGACAUAUUUACUAGAGGGUgaaauuaauagccuUCUAGUAAGAGUGGCAGUUGAAGggaagggcu
...((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))....

Structure
-uca      -cAU    A   A             gaaa 
    cuuccu    GCUG CAU UUUACUAGAGGGU    u
    ||||||    |||| ||| |||||||||||||     
    gaaggG    UGAC GUG GAAUGAUCUuccg    u
ucgg      AAGU    G   A             auaa 


Annotation confidence High
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Genome context
JH977629.1: 20236202-20236281 [-]

Database links

Mature efu-miR-628-5p

Accession MIMAT0035139
Description Eptesicus fuscus efu-miR-628-5p mature miRNA
Sequence 11 - AUGCUGACAUAUUUACUAGAGGGU - 34
Evidence experimental
Illumina [1]

Mature efu-miR-628-3p

Accession MIMAT0058889
Description Eptesicus fuscus efu-miR-628-3p mature miRNA
Sequence 49 - UCUAGUAAGAGUGGCAGUUGAAG - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545