Stem-loop efu-mir-29a

Accession

MI0028886

Description

Eptesicus fuscus efu-mir-29a precursor miRNA

Sequence

426871 reads, 4042.0 reads per million, 8 experiments

cuuagaggaugACUGAUUUCUUUUGGUGUUCAGAgucaauacaauuuuCUAGCACCAUCUGAAAUCGGUUAUaaugaugggg
((((....((((((((((((...(((((((.((((...........)))))))))))...)))))))))))).....)))).

Structure

-    -gagg            UUU       C    ucaa 
 cuua     augACUGAUUUC   UGGUGUU AGAg    u
 ||||     ||||||||||||   ||||||| ||||    a
 gggu     UAUUGGCUAAAG   ACCACGA UCuu    c
g    aguaa            UCU       -    uuaa 

Annotation confidence High

Genome context

JH977672.1: 9215303-9215384 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-29a

Mature efu-miR-29a-5p

• Accession: MIMAT0058915
• Description: Eptesicus fuscus efu-miR-29a-5p mature miRNA
• Sequence: 12 - ACUGAUUUCUUUUGGUGUUCAGA - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-29a-3p

• Accession: MIMAT0035176
• Description: Eptesicus fuscus efu-miR-29a-3p mature miRNA
• Sequence: 49 - CUAGCACCAUCUGAAAUCGGUUAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545