Stem-loop efu-mir-221

Accession

MI0028911

Description

Eptesicus fuscus efu-mir-221 precursor miRNA

Literature search

1 open access papers mention efu-mir-221
(1 sentences)

Sequence

229509 reads, 2316.0 reads per million, 8 experiments

ucgggcuugaACCUGGCAUACAAUGUAGAUUUCUGuguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUcaggcuaccug
...(((((((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))).)))))))).....

Structure

--ucg        -       U         AUUU    -    g 
     ggcuugaA CCUGGCA ACAAUGUAG    CUGu guuu  
     |||||||| ||||||| |||||||||    |||| |||| u
     ucggacUU GGGUCGU UGUUACAUC    GAca cgaa  
gucca        U       C         ----    a    u 

Annotation confidence High

Genome context

JH977694.1: 1249314-1249396 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-221

Mature efu-miR-221-5p

• Accession: MIMAT0035196
• Description: Eptesicus fuscus efu-miR-221-5p mature miRNA
• Sequence: 11 - ACCUGGCAUACAAUGUAGAUUUCUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-221-3p

• Accession: MIMAT0058928
• Description: Eptesicus fuscus efu-miR-221-3p mature miRNA
• Sequence: 51 - AGCUACAUUGUCUGCUGGGUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545