Stem-loop efu-mir-222

Accession

MI0028912

Description

Eptesicus fuscus efu-mir-222 precursor miRNA

Sequence

181200 reads, 1731.0 reads per million, 8 experiments

ugcccucaauGGCUCAGUAGUCAGUGUAGAUCCUGucuuuuauaaucaguAGCUACAUCUGGCUACUGGGUCUCUgauggcauc
((((.(((..(((((((((((((((((((...(((...........)))...))))).))))))))))))))..))).))))..

Structure

--    c   au              -     AUC   ucuu 
  ugcc uca  GGCUCAGUAGUCAG UGUAG   CUG    u
  |||| |||  |||||||||||||| |||||   |||    u
  acgg agU  CUGGGUCAUCGGUC ACAUC   gac    a
cu    u   CU              U     GAu   uaau 

Annotation confidence High

Genome context

JH977694.1: 1248625-1248708 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-222

Mature efu-miR-222-5p

• Accession: MIMAT0035197
• Description: Eptesicus fuscus efu-miR-222-5p mature miRNA
• Sequence: 11 - GGCUCAGUAGUCAGUGUAGAUCCUG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-222-3p

• Accession: MIMAT0058929
• Description: Eptesicus fuscus efu-miR-222-3p mature miRNA
• Sequence: 51 - AGCUACAUCUGGCUACUGGGUCUCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545