Stem-loop xtr-mir-9406

Accession

MI0028999

Description

Xenopus tropicalis xtr-mir-9406 precursor miRNA

Literature search

1 open access papers mention xtr-mir-9406
(1 sentences)

Sequence

51037 reads, 11768.0 reads per million, 3 experiments

gucagccugcuccAUACAUGCCAGCUCAGAGCUGCCUuccccagcaucuucaccuaaagcAGCAAAUCUGUUGGUUUGUACAAACagugaaccag
.(((..(((.....((((.((((((..((((((((.......................)))))...))))))))).))))....)))))).....

Structure

----g   gc   cuccA    U      UC   ---     CUuccccagc 
     uca  cug     UACA GCCAGC  AGA   GCUGC          a
     |||  |||     |||| ||||||  |||   |||||          u
     agu  gaC     AUGU UGGUUG  UCU   CGAcg          c
gacca   --   -AAAC    U      --   AAA     aaauccacuu 

Annotation confidence Medium

Genome context

3: 17222979-17223073 [-]

Mature xtr-miR-9406-5p

• Accession: MIMAT0052182
• Description: Xenopus tropicalis xtr-miR-9406-5p mature miRNA
• Sequence: 14 - AUACAUGCCAGCUCAGAGCUGCCU - 37
• Evidence: experimental ; Illumina [1]

Mature xtr-miR-9406-3p

• Accession: MIMAT0035360
• Description: Xenopus tropicalis xtr-miR-9406-3p mature miRNA
• Sequence: 61 - AGCAAAUCUGUUGGUUUGUACAAAC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24065776
   Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
   "Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS"
   "Genome Res (2014) 24:96-106