Stem-loop xtr-mir-9406

Accession

MI0028999

Description

Xenopus tropicalis xtr-mir-9406 precursor miRNA

Sequence

gucagccugcuccauacaugccagcucagagcugccuuccccagcaucuucaccuaaagcAGCAAAUCUGUUGGUUUGUACAAACagugaaccag
.(((..(((.....((((.((((((..((((((((.......................)))))...))))))))).))))....)))))).....

Structure

----g   gc   cucca    u      uc   ---     cuuccccagc 
     uca  cug     uaca gccagc  aga   gcugc          a
     |||  |||     |||| ||||||  |||   |||||          u
     agu  gaC     AUGU UGGUUG  UCU   CGAcg          c
gacca   --   -AAAC    U      --   AAA     aaauccacuu 

Annotation confidence Not enough data

Genome context

chr3: 11253226-11253320 [+]

Mature xtr-miR-9406

• Accession: MIMAT0035360
• Description: Xenopus tropicalis xtr-miR-9406 mature miRNA
• Sequence: 61 - AGCAAAUCUGUUGGUUUGUACAAAC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24065776
   Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
   "Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS"
   "Genome Res (2014) 24:96-106