Stem-loop xtr-mir-428b

Accession

MI0029001

Description

Xenopus tropicalis xtr-mir-428b precursor miRNA

Literature search

1 open access papers mention xtr-mir-428b
(1 sentences)

Sequence

4 reads, 1.0 reads per million, 2 experiments

cugggcucacagcagccaaacagaagcucugucuugugacucucuauGAGAAAGUGCUUCUCGUUCGGCUGAuuugggcaccgggaaaucgucag
(((((((((...(((((.(((((((((.((.(((((((......))))))).)).)))))).))).)))))...))))).))))...........

Structure

-----------    -     cag     a   -      u  g       ac 
           cugg gcuca   cagcc aac agaagc cu ucuugug  u
           |||| |||||   ||||| ||| |||||| || |||||||   
           ggcc cgggu   GUCGG UUG UCUUCG GA AGAGuau  c
gacugcuaaag    a     uuA     C   C      U  A       cu 

Annotation confidence Not enough data

Genome context

8: 1240241-1240335 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from xtr-mir-428b

Mature xtr-miR-428b-3p

• Accession: MIMAT0035362
• Description: Xenopus tropicalis xtr-miR-428b-3p mature miRNA
• Sequence: 48 - GAGAAAGUGCUUCUCGUUCGGCUGA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24065776
   Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
   "Harding JL, Horswell S, Heliot C, Armisen J, Zimmerman LB, Luscombe NM, Miska EA, Hill CS"
   "Genome Res (2014) 24:96-106