Stem-loop bdi-MIR9481a

Accession

MI0029129

Description

Brachypodium distachyon bdi-MIR9481a precursor miRNA

Sequence

2044629 reads, 21143.0 reads per million, 20 experiments

ugcaaauuCGGAGGUCAGGGAUUCUACUGAUUuaacuaaauuucauccggcaaagugaaaaacuuguacgucggauguuuuuagugggaaaUCAGUCGGAUUUCUCACCUUCGAAUcugcauc
((((.((((((((((.((((((((.((((((((.((((((...((((((((.((((.....))))....))))))))..))))))...)))))))).)))))))).)))))))))).))))..

Structure

--    a          C        U        --a      uuu        ---a    g 
  ugca auuCGGAGGU AGGGAUUC ACUGAUUu   acuaaa   cauccggc    aagu a
  |||| |||||||||| |||||||| ||||||||   ||||||   ||||||||    |||| a
  acgu UAAGCUUCCA UCUUUAGG UGACUaaa   ugauuu   guaggcug    uuca a
cu    c          C        C        ggg      -uu        caug    a 

Annotation confidence High

Genome context

4: 4930203-4930325 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR9481a

Mature bdi-miR9481a-5p

• Accession: MIMAT0057027
• Description: Brachypodium distachyon bdi-miR9481a-5p mature miRNA
• Sequence: 9 - CGGAGGUCAGGGAUUCUACUGAUU - 32
• Evidence: experimental ; unknown

Mature bdi-miR9481a-3p

• Accession: MIMAT0035487
• Description: Brachypodium distachyon bdi-miR9481a-3p mature miRNA
• Sequence: 92 - UCAGUCGGAUUUCUCACCUUCGAAU - 116
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145