Stem-loop bdi-MIR9483b

Accession

MI0029132

Description

Brachypodium distachyon bdi-MIR9483b precursor miRNA

Literature search

1 open access papers mention bdi-MIR9483b
(2 sentences)

Sequence

guagaagUUGAACUGUUUCCUCUGAAGUUCCugcagauuucguguguggaguuggaguguucaucuaaaauguauauauagcuaggaacccuaauaagaaaagcauauauuuggucccuagagaaggucccgaaaucgugucagcgugaaaagucagaacuagguuuuagcaaaauccacacuaaauccauauguugcauuugcauacaugggacacaagaaucucguaggugcuucacaggaaacaguucaauguuugcug
(((((.(((((((((((((((.((((((.(((((((((((...(((((((.(((((.......)))))............(((((((..((((.........((((...(((((..(((.....)))..)))))...)))).....(((....)))....)))))))))))....)))))))....(((.((((((((....))).)))))))).....)))))).))))).)))))).))))))))))))))).)))))..

Structure

--     a               C      U     -      ----------------------------------cgu       guuggaguguucaucuaaaauguauauaua       ac    ----------auaagaaaa    aua     uc   a 
  guaga gUUGAACUGUUUCCU UGAAGU CCugc agauuu                                     gugugga                              gcuagga  ccua                   gcau   uuugg  ccu g
  ||||| ||||||||||||||| |||||| ||||| ||||||                                     |||||||                              |||||||  ||||                   ||||   |||||  ||| a
  cguuu uaacuugacaaagga acuucg ggaug ucuaag                                     cacaccu                              cgauuuu  ggau                   ugug   aagcc  gga g
gu     g               c      u     c      aacacaggguacauacguuuacguuguauaccuaaau       --------------------------aaaa       --    caagacugaaaagugcgac    cua     cu   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature bdi-miR9483b

• Accession: MIMAT0035490
• Description: Brachypodium distachyon bdi-miR9483b mature miRNA
• Sequence: 8 - UUGAACUGUUUCCUCUGAAGUUCC - 31
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145