miRBase entry: bdi-MIR9484

Stem-loop bdi-MIR9484


Accession
MI0029133
Description
Brachypodium distachyon bdi-MIR9484 precursor miRNA


Sequence

4497 reads, 34.0 reads per million, 21 experiments
aauccUAGUGCAGGGAGAAGUCGGUCuugacaagcauacccacacuaagugaugggggucggagagaccccaaugugggcagacccuguccucagcacgcucaucaagacuggcuUCUACCUGGACUAGGACUCC
..(((((((.((((.(((((((((((((((..(((.....(((.....)))...((((((.....))))))..((.((((((...)))))).))....)))..))))))))))))))).)))).)))))))....

Structure
--aa       G    G               ca   auacccacacuaagugaugggggucggagagaccccaa  u      a 
    uccUAGU CAGG AGAAGUCGGUCuuga  agc                                      ug gggcag  
    ||||||| |||| |||||||||||||||  |||                                      || |||||| c
    AGGAUCA GUCC UCUucggucagaacu  ucg                                      ac ccuguc  
CCUC       G    A               ac   ----------------------------------cacg  u      c 


Annotation confidence Medium
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Genome context
2: 43034395-43034529 [-]

Database links

Mature bdi-miR9484-5p

Accession MIMAT0035491
Description Brachypodium distachyon bdi-miR9484-5p mature miRNA
Sequence 6 - UAGUGCAGGGAGAAGUCGGUC - 26
Evidence not_experimental

Mature bdi-miR9484-3p

Accession MIMAT0057029
Description Brachypodium distachyon bdi-miR9484-3p mature miRNA
Sequence 116 - UCUACCUGGACUAGGACUCC - 135
Evidence experimental
unknown

References

  1. PubMed ID: 24367943
    Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
    Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
    Genome Biol (2013) 14:R145