Stem-loop bdi-MIR9485

Accession

MI0029134

Description

Brachypodium distachyon bdi-MIR9485 precursor miRNA

Sequence

1116 reads, 8.0 reads per million, 20 experiments

gaucacacUUAUGACGUGUAGGAGUUGCAacaauuucaacgaccuuuucaaacuugaacugcuggugaccaggaauuauguugugugucuucaagugguuccuauuuuggaaguuugaGAAGGUCGGUGAAACUGUUGCAACuccuacaccuuauaaguaugaucca
(((((.((((((((.(((((((((((((((((.(((((.((((((((((((((((((((((((((.(((((.((......)).)).))).)).)))))))).........)))))))))))))))).))))).))))))))))))))))).)))))))).)))))..

Structure

--     c        C                 a     a                ---------        -  u   -  g  au 
  gauca acUUAUGA GUGUAGGAGUUGCAaca uuuca cgaccuuuucaaacuu         gaacugcu gg gac ca ga  u
  ||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||         |||||||| || ||| || ||   
  cuagu ugaauauu cacauccuCAACGUUGU AAAGU GCUGGAAGaguuugaa         cuugguga cu cug gu uu  a
ac     a        c                 C     G                gguuuuauc        a  u   u  g  gu 

Annotation confidence Medium

Genome context

2: 9203374-9203540 [+]

Mature bdi-miR9485-5p

• Accession: MIMAT0035492
• Description: Brachypodium distachyon bdi-miR9485-5p mature miRNA
• Sequence: 9 - UUAUGACGUGUAGGAGUUGCA - 29
• Evidence: not_experimental

Mature bdi-miR9485-3p

• Accession: MIMAT0057030
• Description: Brachypodium distachyon bdi-miR9485-3p mature miRNA
• Sequence: 119 - GAAGGUCGGUGAAACUGUUGCAAC - 142
• Evidence: experimental ; unknown

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145