Stem-loop bdi-MIR9486a

Accession

MI0029135

Description

Brachypodium distachyon bdi-MIR9486a precursor miRNA

Literature search

0 open access papers mention bdi-MIR9486a
(0 sentences)

Sequence

31650 reads, 161.0 reads per million, 21 experiments

ucaaaggggaaaccucuaaucacuucaaggcauuuUAUGAAGAAAAAACCCUGGAUCCaggguuuuuucuuucauaaaAUGCUUUCAAGGGAUUAGAGGUUCcaccuuucaua
..(((((((((.(((((((((.(((.(((((((((((((((((((((((((((....)))))))))))).))))))))))))))).))).))))))))))))).)))))....

Structure

--uc     -    a         a   c               -            G 
    aaagg ggaa ccucuaauc cuu aaggcauuuUAUGAA GAAAAAACCCUG A
    ||||| |||| ||||||||| ||| ||||||||||||||| ||||||||||||  
    uuucc cCUU GGAGAUUAG GAA UUUCGUAaaauacuu cuuuuuugggaC U
auac     a    -         G   C               u            C 

Annotation confidence Low

Genome context

4: 7498369-7498481 [-]

Mature bdi-miR9486a-5p

• Accession: MIMAT0057031
• Description: Brachypodium distachyon bdi-miR9486a-5p mature miRNA
• Sequence: 36 - UAUGAAGAAAAAACCCUGGAUCC - 58
• Evidence: experimental ; unknown

Mature bdi-miR9486a-3p

• Accession: MIMAT0035493
• Description: Brachypodium distachyon bdi-miR9486a-3p mature miRNA
• Sequence: 79 - AUGCUUUCAAGGGAUUAGAGGUUC - 102
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145